Index

A

accept() (in module pylj.mc) (pylj.util.System method) add() (pylj.util.Particle method)

average() (pylj.sample.Phase method) (pylj.sample.RDF method) (pylj.sample.Scattering method)

B

buckingham (class in pylj.forcefields)

C

calculate_msd() (in module pylj.md) calculate_pressure() (in module pylj.pairwise) calculate_temperature() (in module pylj.md) CellPlus (class in pylj.sample)

compute_energy() (pylj.util.System method) compute_force() (in module pylj.md) (in module pylj.pairwise) (pylj.util.System method) create_dist_identifiers() (in module pylj.pairwise)

D

dist() (in module pylj.pairwise)

E

Energy (class in pylj.sample) energy() (pylj.forcefields.buckingham method) (pylj.forcefields.lennard_jones_sigma_epsilon method) (pylj.forcefields.square_well method)

environment() (in module pylj.sample)

F

force() (pylj.forcefields.buckingham method) (pylj.forcefields.lennard_jones_sigma_epsilon method) (pylj.forcefields.square_well method)

G

get_new_particle() (in module pylj.mc)

H

heat_bath() (in module pylj.md) (in module pylj.pairwise) (pylj.util.System method)

I

initialise() (in module pylj.mc) (in module pylj.md) initialize() (in module pylj.mc) (in module pylj.md)

integrate() (pylj.util.System method) Interactions (class in pylj.sample)

J

JustCell (class in pylj.sample)

L

lennard_jones (class in pylj.forcefields) lennard_jones_energy() (in module pylj.pairwise)

lennard_jones_force() (in module pylj.pairwise) lennard_jones_sigma_epsilon (class in pylj.forcefields)

M

MaxBolt (class in pylj.sample) mc_sample() (pylj.util.System method) md_sample() (pylj.util.System method) metropolis() (in module pylj.mc) mixing() (pylj.forcefields.buckingham method) (pylj.forcefields.lennard_jones method) (pylj.forcefields.lennard_jones_sigma_epsilon method)

module pylj.forcefields pylj.mc pylj.md pylj.pairwise pylj.sample pylj.util

N

new_random_position() (pylj.util.System method)

number_of_pairs() (pylj.util.System method)

P

Particle (class in pylj.util) particle_dt() (in module pylj.util) pbc_correction() (in module pylj.pairwise) Phase (class in pylj.sample) pylj.forcefields module pylj.mc module

pylj.md module pylj.pairwise module pylj.sample module pylj.util module

R

random() (pylj.util.System method) RDF (class in pylj.sample)

reject() (in module pylj.mc) (pylj.util.System method)

S

sample() (in module pylj.mc) (in module pylj.md) Scattering (class in pylj.sample) second_law() (in module pylj.pairwise) select_random_particle() (in module pylj.mc) (pylj.util.System method) separation() (in module pylj.pairwise) setup_cellview() (in module pylj.sample) setup_diffview() (in module pylj.sample) setup_energyview() (in module pylj.sample) setup_forceview() (in module pylj.sample)

setup_maxbolthist() (in module pylj.sample) setup_msdview() (in module pylj.sample) setup_point_sizes() (pylj.util.System method) setup_pressureview() (in module pylj.sample) setup_rdfview() (in module pylj.sample) setup_tempview() (in module pylj.sample) setup_type_identifiers() (pylj.util.System method) setup_types() (pylj.util.System method) square() (pylj.util.System method) square_well (class in pylj.forcefields) System (class in pylj.util)

U

update() (pylj.sample.CellPlus method) (pylj.sample.Energy method) (pylj.sample.Interactions method) (pylj.sample.JustCell method) (pylj.sample.MaxBolt method) (pylj.sample.Phase method) (pylj.sample.RDF method) (pylj.sample.Scattering method) update_accelerations() (in module pylj.pairwise) update_cellview() (in module pylj.sample)

update_diffview() (in module pylj.sample) update_energyview() (in module pylj.sample) update_forceview() (in module pylj.sample) update_maxbolthist() (in module pylj.sample) update_msdview() (in module pylj.sample) update_positions() (in module pylj.md) update_pressureview() (in module pylj.sample) update_rdfview() (in module pylj.sample) update_tempview() (in module pylj.sample) update_velocities() (in module pylj.md)

V

velocity_verlet() (in module pylj.md)