pylj modules

• pylj.forcefields
  • buckingham
    • buckingham.energy()
    • buckingham.force()
    • buckingham.mixing()
  • lennard_jones
    • lennard_jones.mixing()
  • lennard_jones_sigma_epsilon
    • lennard_jones_sigma_epsilon.energy()
    • lennard_jones_sigma_epsilon.force()
    • lennard_jones_sigma_epsilon.mixing()
  • square_well
    • square_well.energy()
    • square_well.force()
• pylj.mc
  • accept()
  • get_new_particle()
  • initialise()
  • initialize()
  • metropolis()
  • reject()
  • sample()
  • select_random_particle()
• pylj.md
  • calculate_msd()
  • calculate_temperature()
  • compute_force()
  • heat_bath()
  • initialise()
  • initialize()
  • sample()
  • update_positions()
  • update_velocities()
  • velocity_verlet()
• pylj.pairwise
  • calculate_pressure()
  • compute_force()
  • create_dist_identifiers()
  • dist()
  • heat_bath()
  • lennard_jones_energy()
  • lennard_jones_force()
  • pbc_correction()
  • second_law()
  • separation()
  • update_accelerations()
• pylj.sample
  • CellPlus
    • CellPlus.update()
  • Energy
    • Energy.update()
  • Interactions
    • Interactions.update()
  • JustCell
    • JustCell.update()
  • MaxBolt
    • MaxBolt.update()
  • Phase
    • Phase.average()
    • Phase.update()
  • RDF
    • RDF.average()
    • RDF.update()
  • Scattering
    • Scattering.average()
    • Scattering.update()
  • environment()
  • setup_cellview()
  • setup_diffview()
  • setup_energyview()
  • setup_forceview()
  • setup_maxbolthist()
  • setup_msdview()
  • setup_pressureview()
  • setup_rdfview()
  • setup_tempview()
  • update_cellview()
  • update_diffview()
  • update_energyview()
  • update_forceview()
  • update_maxbolthist()
  • update_msdview()
  • update_pressureview()
  • update_rdfview()
  • update_tempview()
• pylj.util
  • Particle
    • Particle.add()
  • System
    • System.accept()
    • System.compute_energy()
    • System.compute_force()
    • System.heat_bath()
    • System.integrate()
    • System.mc_sample()
    • System.md_sample()
    • System.new_random_position()
    • System.number_of_pairs()
    • System.random()
    • System.reject()
    • System.select_random_particle()
    • System.setup_point_sizes()
    • System.setup_type_identifiers()
    • System.setup_types()
    • System.square()
  • particle_dt()